Conférences - Logiciels - Allemagne

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Allemagne (3) - Pologne (1) - TOUS LES PAYS (4)

1
EMBL Course: Whole Transcriptome Data Analysis
03 jui 2019 - 07 jui 2019 • Heidelberg, Allemagne
Résumé:
This course will teach scientists how to analyse biological data sets using open-source software. Most of the analysis will be performed with docker4seq package, which was developed to facilitate the use of computing demanding applications in the field of NGS data analysis. Docker4seq package uses docker containers that embed demanding computing tasks (e.g. short reads mapping) into isolated containers. This approach provides multiple advantages: the user does not need to install all the software on its local server, the results generated by different containers can be organised in pipelines and reproducible research is guarantee by the possibility of sharing the docker images used for the analysis.
Contact:
EMBL Events;     Tél.: [+49 6221 387 8797];     Email.: events@embl.de
Sujets:
open source software, data analysis, biological interpretation
Identifiant de l'évènement:
1158291
Sujets apparentés:
2
EMBL Course: Attacking Open Chromatin with ATAC Sequencing
26 aou 2019 - 30 aou 2019 • Heidelberg, Allemagne
Résumé:
ATAC-Seq stands for Assay of Transposase Accessible Chromatin and is, despite its recent invention, already a widespread method to profile open chromatin on a genome-scale. The goal of this introductory course is to teach the entire workflow of an ATAC-Seq experiment including library preparation, sequencing, data processing, and downstream analysis by addressing a real biological question that will be answered at the end of the course.

We will start with the experimental ATAC-Seq protocol, highlighting the critical steps, potential pitfalls, and the most up-to-date tweaks to improve the quality of the results. After sequencing the samples we will go through the basic quality control and preprocessing steps using multiple analysis tools for next generation sequencing data. Finally, we will perform different types of analysis on the processed data, including visualisation, differential peak calling, and differential transcription factor activity profiling to come to a biological conclusion. In addition we will discuss recent advancements in technology development and algorithms for analysis and give an outlook on future perspectives and applications.

Contact:
EMBL Events;     Tél.: [+49 6221 387 8797];     Email.: events@embl.de
Sujets:
chromatin, library preparation, sequencing, data processing, molecular biology, bioinformatics
Identifiant de l'évènement:
1158367
Sujets apparentés:
3
EMBL Course: Whole Transcriptome Data Analysis
30 sep 2019 - 04 oct 2019 • Heidelberg, Allemagne
Résumé:
This course will teach scientists how to analyse biological data sets using open-source software. Most of the analysis will be performed with docker4seq package, which was developed to facilitate the use of computing demanding applications in the field of NGS data analysis. Docker4seq package uses docker containers that embed demanding computing tasks (e.g. short reads mapping) into isolated containers. This approach provides multiple advantages: the user does not need to install all the software on its local server, the results generated by different containers can be organised in pipelines and reproducible research is guarantee by the possibility of sharing the docker images used for the analysis.
Contact:
EMBL Events;     Tél.: [+49 6221 387 8797];     Email.: events@embl.de
Sujets:
open-source software, data analysis, sequencing, biological interpretation
Identifiant de l'évènement:
1158333
Sujets apparentés:

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Dernière mise à jour: 11 Décembre 2018